Summary I have a 1.txt with following order like this:
HLA-A1 HLA-A2 HLA-A3 HLA-A4 . . .
And another 2.txt with the order like (the line number=”2/3″ is constant, just the exon line is changed)
exon 1..2 /number="2" exon 3..4 /number="3" exon 6..7 /number="2" exon 4..7 /number="3" exon 9..31 /number="2" exon 25..134 /number="3" exon...
How can I use the merge
command or another command to merge 5 rows in 2.txt with 1 row in 1.txt to have the final result seem like:
HLA-A1 exon 1..2 /number="2" exon 3..4 /number="3" HLA-A2 exon 6..7 /number="2" exon 4..7 /number="3" HLA-A3 exon 9..31 /number="2" exon 25..134 /number="3" HLA-A4 ... . .
Many thanks for your help!
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Answer
Learn awk and get with the program, son:
$ awk 'NR==FNR{a[FNR]=$0;next}{print a[FNR],$1,$2,$3,$4}' file1 RS="" FS="n" file2
Output:
HLA-A1 exon 1..2 /number="2" exon 3..4 /number="3" HLA-A2 exon 6..7 /number="2" exon 4..7 /number="3" HLA-A3 exon 9..31 /number="2" exon 25..134 /number="3" HLA-A4 exon...