I wrote a python script that uses numpy, multiprocessing, tqdm and a feq other Python libraries. Additionally, I run packages (e.g. samtools, bwa, GATK) set are necessary to be installed in linux (apt-get install). I’d like to somehow wrap all these dependencies up to make the final installation as user-friendly and stable as possible. It seems as pip is not
Tag: python
Is there a way to delete zip archive comments in python?
I have multiple zip archives all with a similar comment. Is there a way to delete the comment from the archives with python and use it over multiple archives with similar comment? What I have tried with single archive This is not working. Comment is not getting deleted in the archive, plus I want this to work on multiple archives
fixing the path so python can recognize z3 modules
I have successfully installed z3 on a remote server where I am not root. when I try to run my python code I get : I understand that I have to add it to PYTHONPATH in order to work and so I went ahead and done that like this: export PYTHONPATH=$HOME/usr/lib/python-2.7/site-packages:$PYTHONPATH I still get the same issue though, how can
How can I pass a python script as an argument?
I’m working on a program that I need to brute force with a 4 pin number in order to get a flag. This is for some Cybersecurity challenges. I was able to create a python script that will print every combination of 4 digits number. However, I don’t know how can I pass that as an argument to the program
fortran subroutine import in python fails
I am trying to import a fortran subroutine into python code. Following this guide https://notmatthancock.github.io/2017/02/10/calling-fortran-from-python.html I have added the following line into my fortran code: However when I try to use f2py -c fireball_ES_param.f -m fireball to create fireball.so to import in my python code I get several hundreds of warnings, which might be the problem but I am not
Is there a way to sort the groups in an ansible host file without sorting the hosts within the groups?
In an ansible host(or inventory) file, you can group host using brackets. I want to sort these groups using sort function in linux but it will sort the individual hosts, and I want the right host to still be under the correct group. For example, I’m looking for a way to sort by group while keeping the host under the
Ctypes linux behavior differs on py2 and py3
While writing a python wrapper for the getmntent linux libc function, there is a strange difference between the behaviour between python 2.x and 3.x for the following code where most of the real work is done by the C library. Since I interface C code with python often, Can anyone explain or correct what is going wrong? The expected output
vscode python linux: how to automatically open terminal in right venv?
every time I open a vscode workspace I get a terminal the isn’t attached to the right venv, although I did put the right python path in ws.code-workspace.json: is there a way to automatically get the terminal running in the right venv? Answer Your steps to detect the venv path are correct, but: The right answer is that currently the
An error about TypeError: expected str, bytes or os.PathLike object, not NoneType
I tried to correct English grammar by running a model. My development environment is Linux + Anaconda3 + Python 3.6 + CUDA 9.0 + tensorflow1.9.0 After I ran the model, there was the following problem with the test: How should I solve this problem? Answer It would be helpful to see some code but it looks like the a variable
SFTP using Python Paramiko directly between two remote machines
I have a code where I have to login into a Unix server. After that I have to sftp into some server and have download few files to that Unix server. I am using Pythons’ Paramiko command to login into Unix server. I know by using sftp.get(filepath, localpath), I can sftp files from SFTP server to local machine. However, my